FastQCFastQC Report
Wed 31 May 2023
EGAF00007941455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37281.041288426838874No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33540.9368244054768197No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32600.9105687423537364No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17160.4793055097788379No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14430.403052360495841No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12840.3586411856387109No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9260.2586462133188834No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7960.22233518985078962No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7940.22177655872051127No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7390.20641420263785618No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6990.1952415800322889No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.16786865464864895No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5970.16675139238809222No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.1639582367367004No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5860.16367892117156121No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5660.15809260986877754No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5240.14636135613293186No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5210.14552340943751432No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5070.14161299152556575No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4760.13295420900625107No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4570.1276472132686066No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4550.12708858213832824No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4450.12429542648693642No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4140.11563664396762173No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC4010.11200554162081236No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC3960.11060896379511645No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA3880.10837443927400299No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA3690.10306744353635851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)