FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403486
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16550.4101753220681758No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14800.3668033091606648No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10460.25924071715003744No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8480.21016838254611067No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6710.16630068949108517No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5080.12590275746866061No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4700.11648483466588681No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4270.10582771149432693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)