FastQCFastQC Report
Wed 31 May 2023
EGAF00007941459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430761
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37690.8749631466172657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15560.3612211876191206No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14420.3347563962382853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7730.17944985734548857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5690.13209180961136222No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5640.1309310731472905No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4930.11444861535747201No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4590.1065556074017843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)