FastQCFastQC Report
Sun 21 May 2023
EGAF00007941461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430187
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41180.957258122630391No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13170.3061459318854359No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11730.27267211700957955No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10470.24338252899320528No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9720.22594825041203012No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9640.2240885940300381No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8280.1924744355361738No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8220.19107969324967977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8070.18759283753344475No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7220.16783398847477957No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7200.16736907437928158No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7060.16411467571079552No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7010.1629523904720505No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6910.1606278199945605No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6720.15621113608732948No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6240.14505319779537737No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6130.14249617027013833No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5810.13505754474217027No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5580.1297110326439432No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5560.12924611854844523No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5400.12552680578446118No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5080.11808818025649312No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4960.11529869568350508No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4920.11436886749250907No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4900.11390395339701107No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4850.11274166815826606No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4600.10693024196454101No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4380.10181618691406295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)