FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941463

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941463
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24860.6303261418005625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18760.47566043524451124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16650.42216131379643457No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11400.28904738602278407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11360.2880331846683181No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11060.2804266745098238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10570.26800270791761643No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10520.266734956224534No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10140.2571000433571079No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9330.23656246592917324No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8520.21602488850123858No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7350.18635949888311076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6880.17444263296813634No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6800.17241423025920452No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6670.1691180758571903No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.16531482077794316No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6450.1635399684076278No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5810.14731274673617328No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5730.14528434402724144No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5510.13970623657767894No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5460.13843848488459656No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4800.12170416253590907No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4770.12094351152005962No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4710.11942220948836077No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4520.1146047530546477No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4450.11282990068433235No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4350.1102943972981676No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4250.10775889391200283No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4220.1069982428961534No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4220.1069982428961534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)