FastQCFastQC Report
Sun 21 May 2023
EGAF00007941465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374920
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32160.8577829937053237No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23570.6286674490557985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17570.4686333084391337No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16290.43449269177424515No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12300.328069988264163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10370.2765923396991358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.273658380454497No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10060.2683239091006081No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9230.2461858529819695No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8730.23284967459724742No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8160.21764643123866426No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7450.1987090579323589No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6530.17417048970447027No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6410.17096980689213698No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6370.16990291262135923No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6060.16163448202283154No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5790.15443294569508162No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5560.14829830363810945No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5300.141363490878054No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5230.1394964259041929No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5180.13816280806572068No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4840.12909420676410968No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4630.12349301184252641No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4540.12109249973327643No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4210.11229062199935985No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4110.10962338632241546No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4100.109356662754721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)