FastQCFastQC Report
Wed 31 May 2023
EGAF00007941467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394372
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32910.8344912924852677No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26630.6752507784528313No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18840.4777215420973091No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17190.435882872009169No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16800.4259937318065177No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16750.4247258933189983No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15550.39429776961853275No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14650.3714766768431836No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10510.26649965007657744No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10310.26142829612649987No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8610.2183217875508403No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7550.19144361161542908No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7300.1851044191778321No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7210.1828223099002972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7150.1813009037152739No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6880.17445457588266916No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6680.16938322193259156No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6640.16836895114257605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6600.16735468035256054No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6570.1665939772600489No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.15239418619983164No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5980.15163348310732No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5890.14935137382978508No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5620.14250504599718034No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5340.1354051504670717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5050.1280516872394592No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4710.11943038552432728No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4270.10827340683415658No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4170.10573772985911778No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4140.10497702676660614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)