FastQCFastQC Report
Wed 31 May 2023
EGAF00007941468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380759
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21790.5722780026210805No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19390.5092460060037977No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12870.3380090818601793No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG12240.3214631827481425No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8170.21457142181800035No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6710.1762269572091533No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6430.1688732242704703No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6120.16073159137407125No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6070.15941842477787788No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5430.14260989234660243No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5180.1360440593656355No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA5100.13394299281172606No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4950.13000349302314587No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT4860.12763979314999777No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT4570.1200234268920761No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4490.11792236033816665No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3840.10085119458765257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)