FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380759
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50701.3315509285401002No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34750.9126507843544079No Hit
TACGACGACTTCCATACCGATGAAGATAAAC13240.3477265146720104No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12700.33354431543312174No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8480.2227130547143994No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG7790.20459135568693057No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7250.19040915644804193No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6760.1775401238053467No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6360.16703479103579955No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5760.15127679188147883No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5500.14444832558127318No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5470.14366042562355716No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5200.13656932600411284No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTA5100.13394299281172606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5010.13157929293857792No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4500.11818499365740534No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4100.1076796608878582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)