FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387302
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32360.8355236998517953No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17600.4544257452840419No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15820.4084667778632695No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10380.2680079111391111No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.22359812239544333No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7440.19209815596098134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6800.17557358340519802No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6530.16860227935822691No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5910.1525940996948118No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5230.135036741354292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5200.13426215201573966No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4960.1280654373073209No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4540.11722118656758808No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3890.10043841756562062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)