FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences280798
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25790.9184538351412759No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20320.723651877862378No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16560.5897477902264261No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7420.2642468963454156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6860.2443037343570823No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6300.22436057236874907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6050.21545737505252885No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4620.1645310864037493No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4270.15206661016104103No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4180.14886145912720175No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4110.1463685638786601No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4110.1463685638786601No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4050.14423179652276727No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4030.14351954073746964No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC3910.13924600602568396No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3870.1378214944550887No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT3780.13461634342124942No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG3610.1285621692462197No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT3350.1193028440373507No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC2950.10505772833139836No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG2940.10470160043874956No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG2880.10256483308285672No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC2830.10078419361961267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)