FastQCFastQC Report
Sun 21 May 2023
EGAF00007941477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381994
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52911.3851002895333435No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34020.8905899045534746No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20930.5479143651470966No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13440.35183798698408875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9970.26099886385650034No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9370.24529181086613924No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9200.24084147918553692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9130.2390089896699948No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8900.23298795269035638No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8260.21623376283397122No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.18874642010083928No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6990.18298716733770687No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6170.16152086158421336No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6150.16099729315120132No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.12644177657240688No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4770.12487107127337078No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4430.11597040791216616No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4060.10628439190144348No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA3990.10445190238590135No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3850.10078692335481708No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG3850.10078692335481708No Hit

[OK]Adapter Content

Adapter graph