FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369764
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20010.5411559805713915No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16850.45569606559859804No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16490.4459601259181532No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14840.4013370690494477No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12410.33561947620644517No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA12090.32696530760160536No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12000.32453132268149415No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11320.30614121439620945No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG10470.28315357903960364No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8620.23312166679287327No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8400.22717192587704588No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8290.2241970554191322No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8260.22338572711242846No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8160.22068129942341602No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7810.2112158025118724No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT7530.20364340498263758No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG7290.19715277852900767No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6610.17876267024372303No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6440.17416514317240187No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5890.15929079088283338No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5520.1492844084334873No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5300.1433346675176599No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4820.13035341461040015No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4760.12873075799699268No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4520.12224013154336279No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4480.12115836046775783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)