FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369764
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36890.9976633744766933No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31620.8551400352657371No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20970.567118486385911No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19810.5357471251933665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18510.5005895652362047No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15850.4286517887084735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15000.4056641533518677No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12590.3404874460466676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12200.32994017805951903No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12150.3285879642150128No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG10060.27206542551465257No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT8790.23771919386419443No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT8050.21770642896550232No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7820.2114862452807737No Hit
TACGACGACTTCCATACCGATGAAGATAAAC7340.1985049923735139No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6780.1833601973150442No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6640.17957399855042674No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6440.17416514317240187No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6200.16767451671877198No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5260.1422528964420549No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5140.13900758321523998No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5070.1371144838329313No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4980.13468049891282005No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4760.12873075799699268No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4640.12548544477017773No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC3880.1049317943336831No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC3860.10439090879588063No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3810.1030386949513744No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3800.10276825218247315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)