FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488766
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29010.5935355568922552No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27480.5622322338296853No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG24630.5039221222425455No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17740.36295487001960036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16560.33881243785369686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12330.2522679564454156No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11460.2344680276451308No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11440.234058833879607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10870.22239681156217905No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10390.2125761611896081No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10140.20746123912056075No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9980.20418768899637044No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9740.19927736381008498No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9450.19334405420999007No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9100.18618316331332377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8840.1808636443615145No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8590.17574872229246713No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8270.16920162204408654No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7820.15999476231980128No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7620.1559028246645634No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7520.15385685583694447No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6930.14178563975399272No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6350.12991902055380283No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6350.12991902055380283No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6330.12950982678827905No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6320.12930522990551716No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6180.12644087354685066No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6130.12541788913304117No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6110.12500869536751738No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6000.12275812965713655No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5970.12214433900885086No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5860.11989377329847002No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5570.11396046369837509No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5570.11396046369837509No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5540.1133466730500894No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5370.10986852604313721No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5290.10823175098104207No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5130.10495820085685174No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4970.10168465073266143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)