FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456558
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12790.2801396536694133No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11350.24859930173165296No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7800.170843572996202No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6930.1517879437004718No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6910.1513498832568918No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5190.11367668510901133No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4960.10863899000784127No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4850.10622965756815125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)