FastQCFastQC Report
Wed 31 May 2023
EGAF00007941489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456558
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27890.6108752885723172No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25230.5526132495761765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9050.1982223507199523No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7810.17106260321799202No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7080.1550733970273218No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6050.13251328418295158No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5810.1272565588599915No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5500.12046662198450142No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5300.11608601754870138No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.11389571533080135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)