FastQCFastQC Report
Sun 21 May 2023
EGAF00007941495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440629
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65911.4958162081932873No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30470.6915114529456754No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16140.36629454711333115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14250.3234013194773835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12840.2914016099712003No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6410.14547385669123003No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5610.12731799314162257No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5570.12641019996414216No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5420.12300597554859077No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5230.11869395795555898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)