FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448129
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26630.5942485311149245No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25090.5598834264240877No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23560.5257414717637109No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21600.482004065793555No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC21510.47999571551941517No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16680.37221425080724524No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14210.31709619328363037No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11980.267333736491055No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11670.2604160855467957No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11390.25416788469391627No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11270.25149008432839653No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9760.21779442972893964No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT9630.21489347933295994No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9330.20819897841916055No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9230.20596747811456073No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9070.2023970776272011No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8870.19793407701800153No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8420.18789232564730246No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8130.18142097476396304No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8020.17896632442890328No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7890.17606537403292355No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7770.17338757366740382No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7330.16356897232716472No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6920.15441982107830557No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6910.1541966710478456No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6810.1519651707432458No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6700.14951052040818605No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6580.1468327200426663No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6230.139022468976567No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5920.13210481803230767No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5770.12875756757540796No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5440.12139361657022867No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5410.12072416647884872No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5370.11983156635700881No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5340.11916211626562888No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5100.11380651553458937No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5050.11269076538228948No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4960.11068241510814966No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4650.10376476416389031No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4600.1026490140115904No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC4580.10220271395067046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)