FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491448
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18230.3709446370724878No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18220.37074115674496594No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15200.3092900978333415No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14930.3037961289902492No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13550.27571584379222214No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12090.24600771597401966No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11510.2342058569777474No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10760.21894483241360224No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG10580.2152821865182074No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10570.2150787061906855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10300.20958473734759325No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8580.17458612101382037No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8460.17214435708355716No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8160.1660399472578991No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8010.16298774234507007No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7830.15932509644967524No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7800.15871465546710944No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7410.15077892269375398No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT7260.14772671778092494No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7160.1456919145057056No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6880.1399944653350914No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6810.13857010304243786No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6770.13775618173235013No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6670.13572137845713075No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG6590.1340935358369553No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6350.12921000797642884No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG6170.125547362081034No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6000.12208819651316112No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5880.11964643258289788No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5850.11903599160033207No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5840.11883251127281014No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5830.11862903094528822No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5780.11761162930767853No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5740.1167977079975908No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5640.11476290472237144No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5610.11415246373980563No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5470.11130373915449854No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5360.10906545555175726No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5230.1064202112939721No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5030.10235060474353339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)