FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491448
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36870.750231967573375No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31020.6311959759730429No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20770.4226286402630594No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18630.3790838501733652No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14650.298098679819635No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13200.26859403232895446No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12220.24865296023180478No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11740.2388859045107519No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11710.2382754635281861No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11700.23807198320066414No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA11620.23644414058048868No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11450.2329849750126158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10450.2126369422604223No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9270.1886262636128339No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9060.18435317673487328No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8680.17662092428903975No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8280.16848171118816233No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8230.16746430955055266No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8040.16359818332763587No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG7700.15667985219189007No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7610.15484852924419265No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC7500.1526102456414514No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7460.15179632433136364No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7150.14548843417818366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6930.14101186697270107No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6920.14080838664517914No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6910.1406049063176572No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6820.1387735833699598No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG6760.13755270140482817No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6750.13734922107730624No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6700.13633181943969655No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6600.13429701616447723No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6330.12880304732138498No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6110.12432648011590239No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6050.12310559815077078No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5840.11883251127281014No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5790.11781510963520046No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5740.1167977079975908No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT5690.11578030635998111No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5570.1133385424297179No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5570.1133385424297179No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5320.10825153424166951No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5260.1070306522765379No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)