FastQCFastQC Report
Wed 31 May 2023
EGAF00007941500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490061
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24370.49728503186338024No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21240.43341543195642995No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG18380.3750553502523155No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17780.3628119764682356No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15960.32567374265652643No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13130.26792582964161604No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12650.2581311306143521No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12400.2530297248709854No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11030.22507402139733626No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10820.22078884057290826No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT10780.2199726156539696No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10570.21568743482954164No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10200.20813735432935898No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9690.19773048661289103No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9600.19589398054527907No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9350.19079257480191242No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9300.18977229365323908No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8770.17895731347730182No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG8060.16446932116614055No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8020.16365309624720187No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7860.16038819657144723No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7580.1546746221388766No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7180.14651237294948996No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7120.14528803557108197No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7090.14467586688187797No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA6660.13590144900328735No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6590.1344730553951447No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.13243249309779803No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6220.12692297489496207No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG5850.11937289439477942No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5810.11855666947584076No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5720.11672016340822876No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5180.10570112700255682No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5150.10508895831335281No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5000.10202811486733285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)