FastQCFastQC Report
Wed 31 May 2023
EGAF00007941505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458015
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30660.6694103904893944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17260.37684355315873935No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17010.37138521664137636No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16910.3692018820344312No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15870.34649520212220125No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15120.3301201925701124No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13320.290820169645099No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13160.28732683427398664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11650.25435848170911435No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10970.23951180638188707No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10800.23580013755008025No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10740.2344901367859131No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9130.1993384496140956No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8280.1807801054550615No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8170.17837843738742182No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7820.17073676626311365No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7540.16462342936366714No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6940.151523421721996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6900.15065008787921794No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6760.14759341942949467No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6020.1314367433381003No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6010.13121840987740577No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6010.13121840987740577No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5460.11921006953920722No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5340.116590068010873No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5150.11244173225767715No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5130.11200506533628812No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5000.10916673034725938No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4990.10894839688656485No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4920.10742006266170322No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4870.10632839535823062No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4860.1061100618975361No Hit
GAAATGGAAGGCGGCCTGGAACCGGGCGTTT4840.10567339497614707No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4720.10305339344781285No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCA4700.1026167265264238No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4680.10218005960503478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)