FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462101
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31680.6855644112434295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18670.40402422846953373No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17380.3761082533904926No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16740.3622584673047667No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15890.34386422015966206No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15840.34278220562171474No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13360.2891142845395271No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12850.2780777362524643No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11980.2592506832921807No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11300.244535285576097No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10700.23155111112072901No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10610.2296034849524238No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9510.20579916511758253No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8230.17809959294613084No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8230.17809959294613084No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7650.16554822430594177No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7150.15472807892646845No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7110.15386246729611058No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6850.14823599169878449No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6660.1441243364545846No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6400.13849786085725846No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6270.1356846230585954No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5760.12464807477153264No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5570.12053641952733277No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5310.11490994393000664No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5270.11404433229964878No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5160.11166390031616465No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCA5160.11166390031616465No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5070.10971627414785945No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5040.10906706542509106No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4990.10798505088714372No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4950.10711943925678585No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4940.10690303634919639No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4940.10690303634919639No Hit
GAAATGGAAGGCGGCCTGGAACCGGGCGTTT4880.1056046189036596No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4700.1017093665670492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)