FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444400
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20450.46017101710171016No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17340.39018901890189017No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15090.33955895589558954No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14800.333033303330333No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13940.3136813681368137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13320.2997299729972997No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12910.2905040504050405No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12100.27227722772277224No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11400.25652565256525656No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10320.23222322232223222No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9790.22029702970297027No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9530.21444644464446444No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8100.18226822682268226No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7700.17326732673267328No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7690.17304230423042305No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7360.16561656165616562No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7220.16246624662466247No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7100.15976597659765976No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6960.1566156615661566No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6670.15009000900090008No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5990.13478847884788478No Hit
GATAATACGGCCAGCCGGAGAGCGGGTTTCGGTGCCATCGGTAG5770.12983798379837982No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5560.1251125112511251No Hit
GACGGAAGACTGGGTCTGGTCAGAAGAAGTCAGGTTTACCGGCG5530.12443744374437443No Hit
CAGGCGGGAGATCTGAGAGCTCAGGGTGTTGTTGACGCGTTGCA5270.11858685868586859No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5240.11791179117911792No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5240.11791179117911792No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5210.11723672367236725No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5110.11498649864986499No Hit
GTGACCACGGAAGACCAGCGGTTCGCCGGATTCGGTAGTCCAGT4970.11183618361836184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)