FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444400
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64111.4426192619261926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30710.691044104410441No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26210.5897839783978398No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24840.5589558955895589No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17670.3976147614761476No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15630.35171017101710167No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15190.3418091809180918No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14640.32943294329432943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.25697569756975697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11300.2542754275427543No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10590.2382988298829883No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10360.23312331233123312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9850.22164716471647167No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8480.1908190819081908No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8360.18811881188118812No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7750.1743924392439244No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7500.16876687668766877No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7400.1665166516651665No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7340.16516651665166518No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6830.1536903690369037No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6580.14806480648064807No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6540.14716471647164717No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6270.14108910891089108No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5920.1332133213321332No Hit
GGTGCAAAAGTTGTGCGTGTTCGCCGTCTGA5790.1302880288028803No Hit
GTGGTTGAAGGCCAGGAATACTCCTTCCGTG5630.12668766876687668No Hit
GAGATGGTTACCGATCAGGCATTCGAAGACC5520.12421242124212421No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5340.12016201620162018No Hit
ATGAACGGCCAGCGTTATCGCGAAACCCCGC5310.11948694869486948No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4680.10531053105310531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)