FastQCFastQC Report
Wed 31 May 2023
EGAF00007941512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482571
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22010.45609868806869874No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19780.4098878714220291No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16020.33197187564109737No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15840.3282418545664783No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15740.32616962063613436No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14660.30378949418841994No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13710.28410327185015266No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12850.26628206004919486No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12650.26213759218850696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11000.22794573233783214No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10690.22152180715376596No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9890.20494393571101455No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8900.18442881980060966No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8830.1829782560493689No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8180.16950873550213336No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8100.16785094835785822No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7640.15831867227827615No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7620.15790422549220737No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7540.15624643834793223No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7270.1506514067360036No Hit
GATAATACGGCCAGCCGGAGAGCGGGTTTCGGTGCCATCGGTAG7180.14878639619869408No Hit
CAGGCGGGAGATCTGAGAGCTCAGGGTGTTGTTGACGCGTTGCA6640.13759633297483687No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5910.12246902528332618No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5880.12184735510422301No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5860.12143290831815423No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5740.11894622760174152No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5720.11853178081567273No Hit
GTGACCACGGAAGACCAGCGGTTCGCCGGATTCGGTAGTCCAGT5680.11770288724353514No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5540.11480175974105365No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5030.10423336669629962No Hit
GACGGAAGACTGGGTCTGGTCAGAAGAAGTCAGGTTTACCGGCG5020.10402614330326523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)