FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482571
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33410.6923333561279066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31010.6425997417996523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28920.5992900526554642No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26670.5526647892227258No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20250.4196273708946456No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17660.3659565120987378No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16690.3458558429744017No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16590.34378360904405775No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12810.26545316647705725No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12050.24970418860644342No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11450.23727078502437984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11180.23167575341245125No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11090.2298107428751417No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9680.2005922444572923No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9240.191474415163779No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8460.17531099050709636No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8230.17054485246730533No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8010.16598593782054868No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7700.1595620126364825No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7500.15541754477579464No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7370.15272364066634755No Hit
GGTGCAAAAGTTGTGCGTGTTCGCCGTCTGA7250.15023695994993483No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6900.14298414119373107No Hit
GAGATGGTTACCGATCAGGCATTCGAAGACC6810.14111913065642154No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6660.13801077976090564No Hit
ATGAACGGCCAGCGTTATCGCGAAACCCCGC6390.13241574814897705No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6270.12992906743256433No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6130.12702793993008282No Hit
GTGGTTGAAGGCCAGGAATACTCCTTCCGTG5460.1131439725967785No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5310.11003562170126262No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4850.10050334562168055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)