FastQCFastQC Report
Wed 31 May 2023
EGAF00007941514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494154
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23880.4832501608810209No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21060.426182930827232No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11720.23717302703205884No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG9400.19022410017929633No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8480.17160642228940776No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8330.16857093132909984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7150.14469173577467753No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG6830.13821602172602063No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6440.13032374522922005No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5950.12040780809221417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)