FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477962
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68001.422707244508978No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32240.6745306112201388No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11440.2393495717232751No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10660.2230302827421427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9170.19185625635510772No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7320.15315025043831934No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7050.1475012657910043No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5870.12281311066570146No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5270.11025981144944577No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5210.1090044815278202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)