FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences531459
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15070.28355903277581146No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11600.2182670723423632No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10720.20170888064742531No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8600.1618186915641658No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8570.16125420775638383No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT8350.15711465983264936No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6740.12682069548168343No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6590.12399827644277357No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6400.12042321232682107No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6260.11778895455717185No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6260.11778895455717185No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6160.11590734186456529No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5980.11252043901787345No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC5630.10593479459375041No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT5490.10330053682410119No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5370.1010426015929733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)