FastQCFastQC Report
Sun 21 May 2023
EGAF00007941522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493879
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10190.20632584094484682No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8870.1795986466320698No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7450.15084666487135515No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA6950.14072272763166685No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA6570.1330285353295038No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6440.13039631164718485No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6060.12270211934502176No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5610.11359057582930232No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5450.11035091591260207No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5430.10994595842301455No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5370.10873108595425196No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5340.10812364971987067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)