FastQCFastQC Report
Sun 21 May 2023
EGAF00007941523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493879
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30320.6139155542146963No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12240.2478339836275687No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11570.23426790772638645No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10270.20794567090319693No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7510.15206153734011774No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC6950.14072272763166685No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG6690.13545828026702897No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6610.13383845030867886No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6550.13262357783991624No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6070.12290459808981552No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5680.11500792704285867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5620.11379305457409608No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5330.10792117097507689No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5120.10366911733440783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5020.10164432988647018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)