FastQCFastQC Report
Sun 21 May 2023
EGAF00007941524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455666
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9230.20256064749180322No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.1722753069133971No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6500.14264834330408677No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA6070.13321160674704718No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA5930.13013918089126686No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5720.12553054210759634No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5540.12158028029302165No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5150.11302137969477644No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5140.11280192070507786No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5130.11258246171537925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5050.1108267897977905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)