FastQCFastQC Report
Wed 8 May 2024
EGAF00007941525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455666
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66161.4519406758459046No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10960.24052705270966013No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10390.22801789029684022No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9320.20453577839909054No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6380.14001483542770363No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG6110.13408944270584156No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5900.12948080392217107No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5860.12860296796337667No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5760.12640837806639071No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5740.12596946008699353No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5560.12201919827241883No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4880.10709598697291438No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4860.10665706899351719No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4650.10204843020984668No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4610.1011705942510523No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4600.10095113526135371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)