FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455794
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA23040.5054915159041146No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21670.4754340776754411No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16420.360250464025415No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG13140.28828813016406535No Hit
TTGACCTTCGACCTGCGCAGTAACGCCTTTACCCTCGATAGCCT7610.16696139045270453No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7540.16542560893737082No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT5930.13010263408469616No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5840.1281280578506957No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5740.12593408425736188No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5590.12264312386736113No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5360.11759698460269333No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5050.11079566646335845No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5030.11035687174469168No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4680.10267796416802329No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4600.1009227852933562No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4600.1009227852933562No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4590.10070338793402284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)