FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455794
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62691.3754020456609783No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51001.1189265326002535No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16710.3666129874460831No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13700.3005743822867348No Hit
CCGCAGGTAACTGATGTGATCGGCGACGAAG8400.18429378184004178No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8080.17727306634137352No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7760.17025235084270524No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT6440.1412918994106987No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA5850.1283474552100291No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5730.12571468689802848No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5700.12505649482002834No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5570.12220432914869436No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5350.11737758724335995No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5140.1127702426973589No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5090.11167325590069198No Hit
CAGGATGAAATGAAAAAAGACGACCAGATCG5070.11123446118202522No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4940.10838229551069123No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4940.10838229551069123No Hit
AACTCCGTAGCATATGCACGTGAAGGCGGTA4740.10399434832402357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)