FastQCFastQC Report
Sun 21 May 2023
EGAF00007941529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509718
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31910.6260324336201586No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17100.33547961814179605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13450.26387139555597405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11800.23150055520895868No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9850.19324410752612228No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8680.17029023891642045No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7570.14851349177388282No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7430.14576687501716637No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7180.14086220223731555No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6700.13144523050000195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6520.12791386609850935No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5740.1126112870253748No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5380.10554855822238964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)