FastQCFastQC Report
Sun 21 May 2023
EGAF00007941531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507350
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36100.7115403567556913No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30430.599783187148911No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18810.370749975362176No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC15370.30294668374889133No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15120.29801911895141425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.23494628954370747No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10780.21247659406721198No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9530.18783877007982655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8530.1681285108899182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8470.1669458953385237No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7590.14960086725140437No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7180.14151966098354193No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6760.1332413521237804No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6250.12318911993692716No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6180.12180940179363359No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5670.11175716960678034No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5640.11116586183108308No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5320.10485857889031241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)