FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545309
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA49220.9026075124379023No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA42870.786159773632931No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14260.26150311108013985No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12340.22629371603989662No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10900.19988666975971423No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10900.19988666975971423No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10390.1905341742021496No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9050.16596095058031318No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8280.15184051611104896No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8270.15165713384521437No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7050.12928449741339312No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6900.12653376342587414No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6520.11956523732415934No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6170.11314685801994831No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6160.11296347575411372No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6130.11241332895660992No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5530.10141039300653391No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5520.1012270107406993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)