FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545309
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT106111.9458692227709427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32850.6024107432666617No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15290.28039148446110373No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12520.22959459682491945No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12480.22886106776158105No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11940.2189584254065126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11640.2134569574314746No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10680.195852259911353No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9880.181181678644585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9020.16541080378280937No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8590.15752536635192158No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8550.15679183728858317No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7160.13130170233757374No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7100.13020140874256614No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6790.12451655850169355No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6330.11608097427330193No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6270.11498068067829431No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6020.11039612403242931No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5730.10507803832322592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)