FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470591
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65851.3993042790873604No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14260.30302321973858404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11920.25329851187124275No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8650.18381142010790685No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8310.1765864625545325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8290.17616146505139282No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8210.17446147503883416No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8050.1710614950137168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7750.16468653246662174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7480.15894906617423624No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7310.15533658739754905No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6850.14556164482533665No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5940.1262242584324817No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.1262242584324817No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5910.1255867621777722No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5430.11538682210242016No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.11432432834457097No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4950.1051868820270681No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4730.10051190949253172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)