FastQCFastQC Report
Sun 21 May 2023
EGAF00007941536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483738
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15110.3123591696331485No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14220.2939607804224601No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11790.24372697617305233No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11320.23401097288201467No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10260.21209828460861044No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10030.20734364470023028No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC9830.20320917521468232No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9180.18977214938665146No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8900.18398389210688432No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8550.17674857050717535No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7710.15938379866787392No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7190.14863417800544923No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6060.12527442541210324No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5480.11328446390401416No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5320.10997688831557578No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5220.1079096535728018No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5020.10377518408725385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)