FastQCFastQC Report
Wed 31 May 2023
EGAF00007941537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483738
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30750.6356746834029992No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21050.435152913353923No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20850.43101844386837507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14680.3034700602392204No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12710.26274553580657295No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12590.2602648541152442No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10340.21375207240282965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10270.21230500808288782No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC9970.2061033038545659No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9300.19225283107798022No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8210.16971997238174386No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8180.16909980195891164No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6960.14387953809706908No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6530.13499042870314096No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6110.12630804278349025No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5890.12176012634938747No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5660.11700548644100733No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5660.11700548644100733No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5540.11452480474967855No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.11411135780112375No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5450.11266429348118197No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5210.10770293009852441No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5120.10584241883002782No Hit

[OK]Adapter Content

Adapter graph