FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491798
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33810.6874773789238671No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33490.6809706424182286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29530.6004497781609522No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17270.35116043578867745No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15990.3251334897661235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12570.2555927433621121No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9790.19906546996937766No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC6380.12972805908116747No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.12749136840735423No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5690.11569790849088447No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5270.10715781682723395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)