FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516658
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31710.6137522306825791No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12540.2427137487467532No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12450.24097178404282912No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7720.14942186126993098No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.13529259200476912No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6980.1350990403709998No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6100.1180664965992978No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5930.114776118825219No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5360.10374367570036658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)