FastQCFastQC Report
Wed 31 May 2023
EGAF00007941543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457648
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27370.5980578960248925No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18020.3937524035940286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17220.3762717197496766No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12990.28384260392266547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10500.22943397545711988No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8690.1898839282592735No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8020.1752438555396287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7230.15798168024333112No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6740.14727476138866552No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.14640072719644792No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.11078383386358075No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5020.10969129112330875No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4910.10728769709471035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)