FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452929
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61581.3595949917095174No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15750.3477366209714988No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14330.31638512879502084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10530.23248676944951635No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10330.22807106632606877No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10260.2265255702328621No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9370.20687569133352027No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6270.1384322929200824No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6210.13710758198304812No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG6070.13401658979663478No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4840.10686001558743202No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4730.10443137886953584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)