FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479427
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10380.21650845697050855No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4950.1032482526015431No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4840.10095384698817547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)