FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471191
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46710.991317745882243No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25760.5466997459628897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16320.34635636079636495No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13180.27971671784902513No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7780.16511351023258083No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7470.15853443720274793No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6690.14198064054703932No Hit
CGTTGGAGCCGTTCTCCGTCTGAAGGTCGCG6270.13306705773242697No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5590.1186355426992451No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG5560.11799885821248707No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.10929750356012742No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5060.10738745009985336No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4740.10059614890776776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)